ProRes is FCP liked codec, you just need convert your video files to ProRes codec, there will be no problem. There is a third party software called Pavtube HD video Conveter for Mac recommended. It will help you convert various video format including AVI, MKV, MXF, MTS, MOV etc to FCP compatible ProRes codec, you can download a free trail version to check it out.
http://www.pavtube.com/hd-video-converter-mac/